CGH

Detects copy number changes in genomic DNA using array CGH data.
CGH is available as a package for the Windows version of R.
It is also available as a web-based tool, courtesy of Ramón Diáz-Uriarte.


Current version: cgh v1.0-2

Zipped package

cgh_1.0-2.zip

Tarred & gzipped source

cgh_1.0-2.tar.gz

Manuscript

ms.pdf



TITAN

Titration Analyser for interpolating RNA/DNA concentrations from mass spectrometry data.
Titan is available as a package for the Windows version of R.


Current version: Titan v1.0-13

Zipped package

titan_1.0-13.zip

Tarred & gzipped source

titan_1.0-13.tar.gz

User Guide

userguide.pdf

Manuscript

ms.pdf



EBP

An adaptation of ProteinProphet that identifies complex mixtures of proteins from multiple LC MS/MS experiments using an Empirical Bayes Poisson model of peptide expression probabilities. A validation study is forthcoming in Molecular and Cellular Proteomics.

For further details, contact